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- import static org.assertj.core.api.Assertions.assertThat;
- import static org.assertj.core.api.Assertions.entry;
-
- import org.junit.Test;
- import org.junit.Ignore;
-
- public class NucleotideTest {
-
- @Test
- public void testEmptyDnaStringHasNoAdenosine() {
- DNA dna = new DNA("");
- assertThat(dna.count('A')).isEqualTo(0);
- }
-
- @Ignore
- @Test
- public void testEmptyDnaStringHasNoNucleotides() {
- DNA dna = new DNA("");
- assertThat(dna.nucleotideCounts()).hasSize(4).contains(
- entry('A', 0),
- entry('C', 0),
- entry('G', 0),
- entry('T', 0)
- );
- }
-
- @Ignore
- @Test
- public void testRepetitiveCytidineGetsCounted() {
- DNA dna = new DNA("CCCCC");
- assertThat(dna.count('C')).isEqualTo(5);
- }
-
- @Ignore
- @Test
- public void testRepetitiveSequenceWithOnlyGuanosine() {
- DNA dna = new DNA("GGGGGGGG");
- assertThat(dna.nucleotideCounts()).hasSize(4).contains(
- entry('A', 0),
- entry('C', 0),
- entry('G', 8),
- entry('T', 0)
- );
- }
-
- @Ignore
- @Test
- public void testCountsOnlyThymidine() {
- DNA dna = new DNA("GGGGGTAACCCGG");
- assertThat(dna.count('T')).isEqualTo(1);
- }
-
- @Ignore
- @Test
- public void testCountsANucleotideOnlyOnce() {
- DNA dna = new DNA("CGATTGGG");
- dna.count('T');
- assertThat(dna.count('T')).isEqualTo(2);
- }
-
- @Ignore
- @Test
- public void testDnaCountsDoNotChangeAfterCountingAdenosine() {
- DNA dna = new DNA("GATTACA");
- dna.count('A');
- assertThat(dna.nucleotideCounts()).hasSize(4).contains(
- entry('A', 3),
- entry('C', 1),
- entry('G', 1),
- entry('T', 2)
- );
- }
-
- @Ignore
- @Test(expected = IllegalArgumentException.class)
- public void testValidatesNucleotides() {
- DNA dna = new DNA("GACT");
- dna.count('X');
- }
-
- @Ignore
- @Test
- public void testCountsAllNucleotides() {
- String s = "AGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTCTGATAGCAGC";
- DNA dna = new DNA(s);
- assertThat(dna.nucleotideCounts()).hasSize(4).contains(
- entry('A', 20),
- entry('C', 12),
- entry('G', 17),
- entry('T', 21)
- );
- }
- }
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