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@@ -8,22 +8,22 @@ import java.util.Map;
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import static org.hamcrest.Matchers.*;
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import static org.junit.Assert.*;
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-public class NucleotideTest {
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+public class NucleotideCounterTest {
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@Rule
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public ExpectedException expectedException = ExpectedException.none();
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@Test
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public void testEmptyDnaStringHasNoAdenine() {
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- DNA dna = new DNA("");
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- assertThat(dna.count('A'), is(0));
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+ NucleotideCounter nucleotideCounter = new NucleotideCounter("");
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+ assertThat(nucleotideCounter.count('A'), is(0));
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}
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@Ignore("Remove to run test")
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@Test
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public void testEmptyDnaStringHasNoNucleotides() {
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- DNA dna = new DNA("");
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- Map<Character, Integer> counts = dna.nucleotideCounts();
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+ NucleotideCounter nucleotideCounter = new NucleotideCounter("");
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+ Map<Character, Integer> counts = nucleotideCounter.nucleotideCounts();
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assertThat(counts.size(), is(4));
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assertThat(counts, allOf(
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hasEntry('A', 0),
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@@ -36,15 +36,15 @@ public class NucleotideTest {
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@Ignore("Remove to run test")
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@Test
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public void testRepetitiveCytosineGetsCounted() {
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- DNA dna = new DNA("CCCCC");
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- assertThat(dna.count('C'), is(5));
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+ NucleotideCounter nucleotideCounter = new NucleotideCounter("CCCCC");
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+ assertThat(nucleotideCounter.count('C'), is(5));
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}
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@Ignore("Remove to run test")
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@Test
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public void testRepetitiveSequenceWithOnlyGuanine() {
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- DNA dna = new DNA("GGGGGGGG");
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- Map<Character, Integer> counts = dna.nucleotideCounts();
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+ NucleotideCounter nucleotideCounter = new NucleotideCounter("GGGGGGGG");
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+ Map<Character, Integer> counts = nucleotideCounter.nucleotideCounts();
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assertThat(counts.size(), is(4));
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assertThat(counts, allOf(
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hasEntry('A', 0),
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@@ -57,24 +57,24 @@ public class NucleotideTest {
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@Ignore("Remove to run test")
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@Test
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public void testCountsOnlyThymine() {
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- DNA dna = new DNA("GGGGGTAACCCGG");
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- assertThat(dna.count('T'), is(1));
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+ NucleotideCounter nucleotideCounter = new NucleotideCounter("GGGGGTAACCCGG");
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+ assertThat(nucleotideCounter.count('T'), is(1));
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}
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@Ignore("Remove to run test")
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@Test
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public void testCountsANucleotideOnlyOnce() {
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- DNA dna = new DNA("CGATTGGG");
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- dna.count('T');
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- assertThat(dna.count('T'), is(2));
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+ NucleotideCounter nucleotideCounter = new NucleotideCounter("CGATTGGG");
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+ nucleotideCounter.count('T');
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+ assertThat(nucleotideCounter.count('T'), is(2));
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}
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@Ignore("Remove to run test")
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@Test
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public void testDnaCountsDoNotChangeAfterCountingAdenine() {
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- DNA dna = new DNA("GATTACA");
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- dna.count('A');
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- Map<Character, Integer> counts = dna.nucleotideCounts();
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+ NucleotideCounter nucleotideCounter = new NucleotideCounter("GATTACA");
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+ nucleotideCounter.count('A');
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+ Map<Character, Integer> counts = nucleotideCounter.nucleotideCounts();
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assertThat(counts.size(), is(4));
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assertThat(counts, allOf(
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hasEntry('A', 3),
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@@ -88,16 +88,16 @@ public class NucleotideTest {
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@Test
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public void testValidatesNucleotides() {
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expectedException.expect(IllegalArgumentException.class);
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- DNA dna = new DNA("GACT");
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- dna.count('X');
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+ NucleotideCounter nucleotideCounter = new NucleotideCounter("GACT");
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+ nucleotideCounter.count('X');
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}
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@Ignore("Remove to run test")
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@Test
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public void testCountsAllNucleotides() {
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String s = "AGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTCTGATAGCAGC";
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- DNA dna = new DNA(s);
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- Map<Character, Integer> counts = dna.nucleotideCounts();
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+ NucleotideCounter nucleotideCounter = new NucleotideCounter(s);
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+ Map<Character, Integer> counts = nucleotideCounter.nucleotideCounts();
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assertThat(counts.size(), is(4));
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assertThat(counts, allOf(
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hasEntry('A', 20),
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